Variant report

Variant	rs11020267
Chromosome Location	chr11:93058355-93058356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93052299..93059527-chr11:93061747..93065843,7	K562	blood:

Variant related genes	Relation type
ENSG00000165325	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10765600	0.88[EUR][1000 genomes]
rs10765601	0.89[EUR][1000 genomes]
rs10765603	0.91[CEU][hapmap];0.92[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10831019	0.89[EUR][1000 genomes]
rs10831020	0.88[EUR][1000 genomes]
rs10831024	0.99[EUR][1000 genomes]
rs10831025	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10831026	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11020243	0.89[EUR][1000 genomes]
rs11020246	0.89[EUR][1000 genomes]
rs11020263	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11020270	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11020308	0.82[EUR][1000 genomes]
rs11020312	0.83[EUR][1000 genomes]
rs12364612	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs12419719	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs12421032	0.96[EUR][1000 genomes]
rs12790059	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs12807018	0.83[EUR][1000 genomes]
rs12807308	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs12807762	0.88[CEU][hapmap];0.96[EUR][1000 genomes]
rs2399638	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4132359	0.87[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4237558	0.89[EUR][1000 genomes]
rs4301752	0.95[EUR][1000 genomes]
rs4322357	0.89[EUR][1000 genomes]
rs4559645	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs4753455	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4753458	0.80[EUR][1000 genomes]
rs4753459	0.80[EUR][1000 genomes]
rs7107679	0.88[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7110891	0.89[EUR][1000 genomes]
rs7113579	0.81[EUR][1000 genomes]
rs7114042	0.89[EUR][1000 genomes]
rs7122184	0.89[EUR][1000 genomes]
rs7122837	0.88[EUR][1000 genomes]
rs7122902	0.86[EUR][1000 genomes]
rs7126901	0.88[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7936149	0.89[EUR][1000 genomes]
rs7950862	0.89[EUR][1000 genomes]
rs7952273	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv438	chr11:93034411-93080513	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898180	chr11:93045561-93082053	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93051200-93063000	Weak transcription	Pancreas	Pancrea
2	chr11:93057400-93063000	Weak transcription	K562	blood

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