Variant report

Variant	rs4753459
Chromosome Location	chr11:93087780-93087781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10765600	0.85[ASN][1000 genomes]
rs10765601	0.85[ASN][1000 genomes]
rs10765603	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10831019	0.85[ASN][1000 genomes]
rs10831020	0.85[ASN][1000 genomes]
rs10831024	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10831025	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10831026	0.93[ASN][1000 genomes]
rs11020243	0.85[ASN][1000 genomes]
rs11020246	0.88[ASN][1000 genomes]
rs11020263	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020267	0.80[EUR][1000 genomes]
rs11020270	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020308	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11020312	0.93[EUR][1000 genomes]
rs12364612	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12419719	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12421032	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12790059	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12807308	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12807762	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4132359	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4237558	0.85[ASN][1000 genomes]
rs4301752	0.92[ASN][1000 genomes]
rs4322357	0.81[ASN][1000 genomes]
rs4559645	0.82[ASN][1000 genomes]
rs4753455	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4753458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107679	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110891	0.84[ASN][1000 genomes]
rs7114042	0.89[ASN][1000 genomes]
rs7122184	0.85[ASN][1000 genomes]
rs7122837	0.85[ASN][1000 genomes]
rs7122902	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126901	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7936149	0.85[ASN][1000 genomes]
rs7950862	0.85[ASN][1000 genomes]
rs7952273	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93082400-93089000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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