Variant report

Variant	rs11020312
Chromosome Location	chr11:93134216-93134217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10765603	0.84[EUR][1000 genomes]
rs10831024	0.84[EUR][1000 genomes]
rs10831025	0.84[EUR][1000 genomes]
rs10831026	0.81[EUR][1000 genomes]
rs11020263	0.84[EUR][1000 genomes]
rs11020267	0.83[EUR][1000 genomes]
rs11020270	0.84[EUR][1000 genomes]
rs11020308	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12364612	0.87[EUR][1000 genomes]
rs12419719	0.88[EUR][1000 genomes]
rs12421032	0.88[EUR][1000 genomes]
rs12790059	0.88[EUR][1000 genomes]
rs12807308	0.88[EUR][1000 genomes]
rs12807762	0.88[EUR][1000 genomes]
rs4132359	0.87[EUR][1000 genomes]
rs4237558	0.81[EUR][1000 genomes]
rs4301752	0.80[EUR][1000 genomes]
rs4322357	0.81[EUR][1000 genomes]
rs4559645	0.81[EUR][1000 genomes]
rs4753455	0.87[EUR][1000 genomes]
rs4753458	0.93[EUR][1000 genomes]
rs4753459	0.93[EUR][1000 genomes]
rs7107679	0.87[EUR][1000 genomes]
rs7122902	0.97[EUR][1000 genomes]
rs7126901	0.87[EUR][1000 genomes]
rs7952273	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1035530	chr11:93114111-93148948	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv555941	chr11:93129893-93181050	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93126800-93145200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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