Variant report

Variant	rs7113579
Chromosome Location	chr11:93069383-93069384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10765603	0.82[EUR][1000 genomes]
rs10831024	0.82[EUR][1000 genomes]
rs10831025	0.82[EUR][1000 genomes]
rs11020263	0.82[EUR][1000 genomes]
rs11020267	0.81[EUR][1000 genomes]
rs11020270	0.82[EUR][1000 genomes]
rs12364612	0.84[EUR][1000 genomes]
rs12419719	0.83[EUR][1000 genomes]
rs12421032	0.83[EUR][1000 genomes]
rs12790059	0.83[EUR][1000 genomes]
rs12807308	0.83[EUR][1000 genomes]
rs12807762	0.83[EUR][1000 genomes]
rs4132359	0.84[EUR][1000 genomes]
rs4301752	0.84[EUR][1000 genomes]
rs4753455	0.84[EUR][1000 genomes]
rs7107679	0.84[EUR][1000 genomes]
rs7126901	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv438	chr11:93034411-93080513	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898180	chr11:93045561-93082053	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93064200-93076000	Weak transcription	Pancreas	Pancrea
2	chr11:93064600-93081800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links