Variant report

Variant	rs12815560
Chromosome Location	chr12:106684453-106684454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106681884..106684629-chr12:106690142..106692721,2	MCF-7	breast:
2	chr12:106640373..106642748-chr12:106682387..106685392,3	MCF-7	breast:
3	chr12:106638556..106642995-chr12:106679966..106686733,8	MCF-7	breast:
4	chr12:106682888..106685086-chr12:106695950..106698366,2	MCF-7	breast:
5	chr12:106680059..106682241-chr12:106684339..106687312,2	K562	blood:
6	chr12:106679605..106682241-chr12:106684127..106685839,2	K562	blood:
7	chr12:106683028..106684657-chr12:106684829..106686398,2	MCF-7	breast:
8	chr12:106647187..106649805-chr12:106683824..106686258,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12309973	1.00[ASN][1000 genomes]
rs12814176	1.00[ASN][1000 genomes]
rs12814523	1.00[ASN][1000 genomes]
rs12831519	1.00[ASN][1000 genomes]
rs17217845	1.00[ASN][1000 genomes]
rs34826388	1.00[ASN][1000 genomes]
rs34855793	1.00[ASN][1000 genomes]
rs36010188	1.00[ASN][1000 genomes]
rs4964177	1.00[ASN][1000 genomes]
rs4964463	1.00[ASN][1000 genomes]
rs56234907	1.00[ASN][1000 genomes]
rs61941947	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794382	chr12:106679812-106699151	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106678600-106688800	Weak transcription	Lung	lung
2	chr12:106680000-106695200	Weak transcription	Right Atrium	heart
3	chr12:106680400-106684600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:106682000-106684600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:106682800-106685200	Weak transcription	Fetal Intestine Small	intestine
6	chr12:106683000-106685000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:106683000-106685400	Weak transcription	Fetal Intestine Large	intestine
8	chr12:106683200-106684600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:106683200-106684600	Weak transcription	A549	lung
10	chr12:106683200-106693000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:106683400-106685400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr12:106683400-106689600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:106683400-106689800	Weak transcription	Hela-S3	cervix
14	chr12:106683600-106684600	Weak transcription	HepG2	liver
15	chr12:106683600-106689800	Weak transcription	NHEK	skin
16	chr12:106683800-106689600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:106684400-106684600	Enhancers	K562	blood
18	chr12:106684400-106685600	Enhancers	Stomach Mucosa	stomach
19	chr12:106684400-106691400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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