Variant report

Variant	rs61941947
Chromosome Location	chr12:106910004-106910005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12814523	1.00[ASN][1000 genomes]
rs12815560	1.00[ASN][1000 genomes]
rs12827304	1.00[ASN][1000 genomes]
rs12831519	1.00[ASN][1000 genomes]
rs17217845	1.00[ASN][1000 genomes]
rs34826388	1.00[ASN][1000 genomes]
rs34855793	1.00[ASN][1000 genomes]
rs34956441	1.00[ASN][1000 genomes]
rs34998821	1.00[ASN][1000 genomes]
rs36010188	1.00[ASN][1000 genomes]
rs4964177	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964463	1.00[ASN][1000 genomes]
rs61941956	1.00[ASN][1000 genomes]
rs71452919	1.00[ASN][1000 genomes]
rs71452921	1.00[ASN][1000 genomes]
rs7316434	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832510	chr12:106787730-106951140	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106886200-106916400	Weak transcription	A549	lung
2	chr12:106894400-106916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106894600-106913200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:106896400-106916800	Weak transcription	Fetal Intestine Small	intestine
5	chr12:106898600-106916000	Weak transcription	HepG2	liver
6	chr12:106898800-106913200	Weak transcription	Fetal Lung	lung
7	chr12:106899600-106911000	Weak transcription	Brain Germinal Matrix	brain
8	chr12:106901000-106913200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr12:106904800-106912800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:106905600-106913400	Weak transcription	Fetal Muscle Leg	muscle
11	chr12:106905800-106913000	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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