Variant report

Variant	rs71452919
Chromosome Location	chr12:107021528-107021529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12814523	1.00[ASN][1000 genomes]
rs12827304	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12833344	1.00[ASN][1000 genomes]
rs34855793	1.00[ASN][1000 genomes]
rs34956441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34998821	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964177	1.00[ASN][1000 genomes]
rs61941947	1.00[ASN][1000 genomes]
rs61941956	1.00[ASN][1000 genomes]
rs71452921	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71452928	1.00[ASN][1000 genomes]
rs7316434	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560090	chr12:106935136-107223969	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832511	chr12:106945654-107107828	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv9005	chr12:107019233-107367130	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:107015200-107022400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr12:107015600-107024800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:107017000-107022200	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:107019200-107024200	Weak transcription	Brain Anterior Caudate	brain
5	chr12:107020400-107049200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:107020600-107022000	Weak transcription	Pancreas	Pancrea
7	chr12:107020800-107023600	Weak transcription	Brain Germinal Matrix	brain
8	chr12:107020800-107050800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:107021200-107023600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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