Variant report

Variant	rs12816534
Chromosome Location	chr12:29256374-29256375
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29255547..29258096-chr12:29276125..29278955,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12811417	1.00[EUR][1000 genomes]
rs12815733	1.00[EUR][1000 genomes]
rs12817351	1.00[EUR][1000 genomes]
rs12819686	1.00[EUR][1000 genomes]
rs12820515	1.00[EUR][1000 genomes]
rs12826306	1.00[EUR][1000 genomes]
rs12831837	1.00[EUR][1000 genomes]
rs12832977	1.00[EUR][1000 genomes]
rs34064202	1.00[EUR][1000 genomes]
rs34158620	1.00[EUR][1000 genomes]
rs34170651	1.00[EUR][1000 genomes]
rs34237455	1.00[EUR][1000 genomes]
rs34270636	1.00[EUR][1000 genomes]
rs34339523	1.00[EUR][1000 genomes]
rs34391841	1.00[EUR][1000 genomes]
rs34492685	1.00[EUR][1000 genomes]
rs34572599	1.00[EUR][1000 genomes]
rs34601700	1.00[EUR][1000 genomes]
rs34624113	1.00[EUR][1000 genomes]
rs34685180	1.00[EUR][1000 genomes]
rs34690032	1.00[EUR][1000 genomes]
rs34825983	1.00[EUR][1000 genomes]
rs34879577	1.00[EUR][1000 genomes]
rs34941964	1.00[EUR][1000 genomes]
rs34990495	1.00[EUR][1000 genomes]
rs35002558	1.00[EUR][1000 genomes]
rs35039649	1.00[EUR][1000 genomes]
rs35042869	1.00[EUR][1000 genomes]
rs35054952	1.00[EUR][1000 genomes]
rs35071007	1.00[EUR][1000 genomes]
rs35100017	1.00[EUR][1000 genomes]
rs35121122	1.00[EUR][1000 genomes]
rs35195316	1.00[EUR][1000 genomes]
rs35199330	1.00[EUR][1000 genomes]
rs35426167	1.00[EUR][1000 genomes]
rs35447364	1.00[EUR][1000 genomes]
rs35708989	1.00[EUR][1000 genomes]
rs35736217	1.00[EUR][1000 genomes]
rs35763553	1.00[EUR][1000 genomes]
rs35773649	1.00[EUR][1000 genomes]
rs35776525	1.00[EUR][1000 genomes]
rs35779561	1.00[EUR][1000 genomes]
rs35861754	1.00[EUR][1000 genomes]
rs71453726	1.00[EUR][1000 genomes]
rs71453728	1.00[EUR][1000 genomes]
rs71453729	1.00[EUR][1000 genomes]
rs7315584	1.00[EUR][1000 genomes]
rs7955386	1.00[EUR][1000 genomes]
rs7972299	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29254800-29256400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr12:29255000-29256400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:29255400-29257800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:29255800-29256400	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:29255800-29256400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:29255800-29256400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:29255800-29256400	Enhancers	Duodenum Mucosa	Duodenum
8	chr12:29255800-29257200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr12:29255800-29257400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:29255800-29257400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr12:29255800-29257400	Flanking Active TSS	Dnd41	blood
12	chr12:29255800-29257600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:29256000-29256400	Enhancers	Thymus	Thymus
14	chr12:29256000-29256600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr12:29256000-29257000	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr12:29256000-29257000	Flanking Active TSS	GM12878-XiMat	blood
17	chr12:29256000-29257200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr12:29256000-29257400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr12:29256000-29257400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr12:29256200-29256400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr12:29256200-29256400	Enhancers	Fetal Thymus	thymus
22	chr12:29256200-29256600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr12:29256200-29256800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr12:29256200-29256800	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr12:29256200-29257000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr12:29256200-29257000	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr12:29256200-29257000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:29256200-29257200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

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