Variant report

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12813530	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12825170	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv899026	chr12:40279428-40302581	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv558593	chr12:40279428-40317017	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40297000-40300200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr12:40297200-40300600	Enhancers	Fetal Brain Male	brain
3	chr12:40298000-40299200	Enhancers	Left Ventricle	heart
4	chr12:40298000-40299600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:40298200-40299000	Enhancers	NHDF-Ad	bronchial
6	chr12:40298200-40299400	Enhancers	Adipose Nuclei	Adipose
7	chr12:40298200-40299600	Enhancers	Rectal Smooth Muscle	rectum
8	chr12:40298400-40299000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr12:40298400-40299200	Enhancers	Esophagus	oesophagus
10	chr12:40298400-40299200	Enhancers	Right Ventricle	heart
11	chr12:40298400-40299200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr12:40298400-40299600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:40298400-40300000	Enhancers	Colon Smooth Muscle	Colon
14	chr12:40298400-40314200	Weak transcription	Fetal Kidney	kidney
15	chr12:40298600-40299400	Enhancers	Brain Anterior Caudate	brain
16	chr12:40298600-40299400	Enhancers	Brain Cingulate Gyrus	brain
17	chr12:40298600-40299400	Enhancers	Stomach Smooth Muscle	stomach
18	chr12:40298600-40299600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:40298600-40300200	Enhancers	Fetal Brain Female	brain
20	chr12:40298800-40311200	Weak transcription	Pancreas	Pancrea

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