Variant report

Variant	rs12819879
Chromosome Location	chr12:119453846-119453847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12820159	1.00[AFR][1000 genomes]
rs2730443	1.00[ASN][1000 genomes]
rs35446494	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6490223	1.00[AFR][1000 genomes]
rs71452684	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046251	chr12:119353064-119467301	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv541615	chr12:119353064-119467301	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119450200-119456800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:119450600-119456400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:119450800-119455600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:119451000-119454800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:119451000-119455000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr12:119451000-119455200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:119451000-119455800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:119451000-119460000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:119452400-119456000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:119452600-119454000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:119452600-119456800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:119452800-119456800	Weak transcription	Brain Germinal Matrix	brain
13	chr12:119452800-119458000	Weak transcription	Fetal Brain Female	brain
14	chr12:119453000-119455000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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