Variant report

Variant	rs12820159
Chromosome Location	chr12:119520424-119520425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:119519975..119520704-chr12:119608658..119609683,3	MCF-7	breast:
2	chr12:119519961..119522229-chr12:119531990..119534794,2	MCF-7	breast:
3	chr12:119519975..119520880-chr12:119608658..119609701,6	MCF-7	breast:
4	chr12:119520274..119523110-chr12:119524611..119526386,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12819879	1.00[AFR][1000 genomes]
rs35446494	1.00[AFR][1000 genomes]
rs6490223	1.00[AFR][1000 genomes]
rs71452684	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119513800-119523400	Weak transcription	Pancreas	Pancrea
2	chr12:119518600-119520600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:119519200-119521000	Enhancers	Fetal Brain Male	brain
4	chr12:119519400-119520600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:119519400-119520800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:119519400-119521000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:119519400-119521200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:119519400-119521200	Enhancers	Brain Germinal Matrix	brain
9	chr12:119519600-119520800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr12:119519800-119520600	Weak transcription	Fetal Heart	heart
11	chr12:119519800-119520800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:119519800-119521000	Enhancers	Fetal Brain Female	brain
13	chr12:119519800-119521200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:119520000-119520600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:119520000-119520800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr12:119520200-119520600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr12:119520200-119520600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr12:119520200-119521000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr12:119520400-119520600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:119520400-119520600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr12:119520400-119520600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr12:119520400-119520800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:119520400-119520800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
24	chr12:119520400-119520800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr12:119520400-119520800	Enhancers	Fetal Muscle Leg	muscle
26	chr12:119520400-119521000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr12:119520400-119521000	Enhancers	Right Ventricle	heart

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