Variant report

Variant	rs12824576
Chromosome Location	chr12:8774568-8774569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11046380	1.00[ASN][1000 genomes]
rs11046393	1.00[ASN][1000 genomes]
rs12296100	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303273	1.00[ASN][1000 genomes]
rs12321209	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12826733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28386919	1.00[ASN][1000 genomes]
rs34079958	1.00[ASN][1000 genomes]
rs34817631	1.00[ASN][1000 genomes]
rs35384062	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35411363	0.95[AMR][1000 genomes]
rs56776129	1.00[ASN][1000 genomes]
rs6487313	1.00[ASN][1000 genomes]
rs66552846	1.00[ASN][1000 genomes]
rs71447520	1.00[ASN][1000 genomes]
rs71447521	1.00[ASN][1000 genomes]
rs73242785	1.00[ASN][1000 genomes]
rs73242788	1.00[ASN][1000 genomes]
rs73242789	1.00[ASN][1000 genomes]
rs73244411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044543	chr12:8449100-8792569	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1039504	chr12:8494944-8780137	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv933050	chr12:8602789-8775989	Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv933555	chr12:8627165-8775989	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv933639	chr12:8627243-8775989	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1048336	chr12:8663355-8797018	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8771800-8781200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:8773400-8775400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:8773400-8775400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:8774400-8774600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:8774400-8776200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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