Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11046380	1.00[ASN][1000 genomes]
rs11046393	1.00[ASN][1000 genomes]
rs12296100	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303273	1.00[ASN][1000 genomes]
rs12321209	0.85[EUR][1000 genomes]
rs12824576	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826733	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830808	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28386919	1.00[ASN][1000 genomes]
rs34079958	1.00[ASN][1000 genomes]
rs34817631	1.00[ASN][1000 genomes]
rs35411363	0.90[AMR][1000 genomes]
rs56776129	1.00[ASN][1000 genomes]
rs6487313	1.00[ASN][1000 genomes]
rs66552846	1.00[ASN][1000 genomes]
rs71447520	1.00[ASN][1000 genomes]
rs71447521	1.00[ASN][1000 genomes]
rs73242785	1.00[ASN][1000 genomes]
rs73242788	1.00[ASN][1000 genomes]
rs73242789	1.00[ASN][1000 genomes]
rs73244411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044543	chr12:8449100-8792569	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1039504	chr12:8494944-8780137	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1048336	chr12:8663355-8797018	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8771800-8781200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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