Variant report

Variant	rs12825732
Chromosome Location	chr12:60158208-60158209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs12718000	0.83[ASN][1000 genomes]
rs12811123	0.83[ASN][1000 genomes]
rs12811364	0.83[ASN][1000 genomes]
rs12812257	0.83[ASN][1000 genomes]
rs12816372	0.83[ASN][1000 genomes]
rs12817723	0.83[ASN][1000 genomes]
rs12819402	0.83[ASN][1000 genomes]
rs12821998	0.83[ASN][1000 genomes]
rs12823549	0.83[ASN][1000 genomes]
rs12823946	0.83[ASN][1000 genomes]
rs12824130	0.83[ASN][1000 genomes]
rs12824312	0.83[ASN][1000 genomes]
rs12824600	0.83[ASN][1000 genomes]
rs12824910	0.83[ASN][1000 genomes]
rs12826493	0.83[ASN][1000 genomes]
rs12826693	0.83[ASN][1000 genomes]
rs12826770	0.83[ASN][1000 genomes]
rs12826963	0.83[ASN][1000 genomes]
rs12828834	0.83[ASN][1000 genomes]
rs12830142	0.83[ASN][1000 genomes]
rs12831305	0.83[ASN][1000 genomes]
rs1613477	0.83[ASN][1000 genomes]
rs1613544	0.83[ASN][1000 genomes]
rs1617982	0.83[ASN][1000 genomes]
rs1619563	0.83[ASN][1000 genomes]
rs1693597	0.83[ASN][1000 genomes]
rs1693598	0.83[ASN][1000 genomes]
rs1693600	0.83[ASN][1000 genomes]
rs1693601	0.83[ASN][1000 genomes]
rs1693602	0.83[ASN][1000 genomes]
rs1693603	0.83[ASN][1000 genomes]
rs1693604	0.83[ASN][1000 genomes]
rs1693605	0.83[ASN][1000 genomes]
rs1693607	0.83[ASN][1000 genomes]
rs17122972	0.83[ASN][1000 genomes]
rs17122978	0.83[ASN][1000 genomes]
rs17122980	0.83[ASN][1000 genomes]
rs17122985	0.83[ASN][1000 genomes]
rs17122992	0.83[ASN][1000 genomes]
rs17649791	0.83[ASN][1000 genomes]
rs1795883	0.83[ASN][1000 genomes]
rs1795889	0.83[ASN][1000 genomes]
rs1795890	0.83[ASN][1000 genomes]
rs1795893	0.83[ASN][1000 genomes]
rs1795895	0.83[ASN][1000 genomes]
rs1795898	0.83[ASN][1000 genomes]
rs1882504	0.83[ASN][1000 genomes]
rs1882505	0.83[ASN][1000 genomes]
rs2178671	0.83[ASN][1000 genomes]
rs2178672	0.83[ASN][1000 genomes]
rs2222878	0.83[ASN][1000 genomes]
rs2222879	0.83[ASN][1000 genomes]
rs2244244	0.83[ASN][1000 genomes]
rs2706280	0.83[ASN][1000 genomes]
rs2706282	0.83[ASN][1000 genomes]
rs2706283	0.83[ASN][1000 genomes]
rs2706284	0.83[ASN][1000 genomes]
rs2706287	0.83[ASN][1000 genomes]
rs2706289	0.83[ASN][1000 genomes]
rs2706290	0.83[ASN][1000 genomes]
rs2706291	0.83[ASN][1000 genomes]
rs2706292	0.83[ASN][1000 genomes]
rs2706293	0.83[ASN][1000 genomes]
rs2706294	0.83[ASN][1000 genomes]
rs2706300	0.83[ASN][1000 genomes]
rs2706302	0.83[ASN][1000 genomes]
rs2706305	0.83[ASN][1000 genomes]
rs2706307	0.83[ASN][1000 genomes]
rs2706308	0.83[ASN][1000 genomes]
rs2706310	0.83[ASN][1000 genomes]
rs2706311	0.83[ASN][1000 genomes]
rs2706312	0.83[ASN][1000 genomes]
rs2706317	0.83[ASN][1000 genomes]
rs2706318	0.83[ASN][1000 genomes]
rs2706320	0.83[ASN][1000 genomes]
rs2706321	0.83[ASN][1000 genomes]
rs2706322	0.83[ASN][1000 genomes]
rs2711651	0.83[ASN][1000 genomes]
rs2711652	0.83[ASN][1000 genomes]
rs2711654	0.83[ASN][1000 genomes]
rs2711658	0.83[ASN][1000 genomes]
rs2711660	0.83[ASN][1000 genomes]
rs2711662	0.83[ASN][1000 genomes]
rs2711663	0.83[ASN][1000 genomes]
rs2711664	0.83[ASN][1000 genomes]
rs2711667	0.83[ASN][1000 genomes]
rs2711669	0.83[ASN][1000 genomes]
rs2711674	0.83[ASN][1000 genomes]
rs2711675	0.83[ASN][1000 genomes]
rs2711676	0.83[ASN][1000 genomes]
rs2711678	0.83[ASN][1000 genomes]
rs2711679	0.83[ASN][1000 genomes]
rs2711680	0.83[ASN][1000 genomes]
rs2711683	0.83[ASN][1000 genomes]
rs2711686	0.83[ASN][1000 genomes]
rs2711688	0.83[ASN][1000 genomes]
rs2711689	0.83[ASN][1000 genomes]
rs2711690	0.83[ASN][1000 genomes]
rs2711692	1.00[ASN][1000 genomes]
rs2711693	0.83[ASN][1000 genomes]
rs2952446	0.83[ASN][1000 genomes]
rs34038000	0.83[ASN][1000 genomes]
rs34040471	0.83[ASN][1000 genomes]
rs34183506	0.83[ASN][1000 genomes]
rs34272110	0.83[ASN][1000 genomes]
rs34347654	0.83[ASN][1000 genomes]
rs34659184	0.83[ASN][1000 genomes]
rs34790713	0.83[ASN][1000 genomes]
rs34860779	0.83[ASN][1000 genomes]
rs34861412	0.83[ASN][1000 genomes]
rs35096295	0.83[ASN][1000 genomes]
rs35203350	0.83[ASN][1000 genomes]
rs35399130	0.83[ASN][1000 genomes]
rs35506739	0.83[ASN][1000 genomes]
rs35755432	0.83[ASN][1000 genomes]
rs35889150	0.83[ASN][1000 genomes]
rs36072512	0.83[ASN][1000 genomes]
rs36077154	0.83[ASN][1000 genomes]
rs36159000	0.83[ASN][1000 genomes]
rs3763979	0.83[ASN][1000 genomes]
rs5012615	0.83[ASN][1000 genomes]
rs61933773	0.83[ASN][1000 genomes]
rs61933775	0.83[ASN][1000 genomes]
rs61933776	0.83[ASN][1000 genomes]
rs61933804	0.83[ASN][1000 genomes]
rs61933838	0.83[ASN][1000 genomes]
rs61933843	0.83[ASN][1000 genomes]
rs62625022	0.83[ASN][1000 genomes]
rs7132933	0.83[ASN][1000 genomes]
rs7298553	0.83[ASN][1000 genomes]
rs7976838	0.83[ASN][1000 genomes]
rs9325168	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899132	chr12:60087572-60211476	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv899133	chr12:60135504-60202218	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv899135	chr12:60156046-60228610	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60100000-60175200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr12:60124000-60168800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr12:60130800-60172200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr12:60131000-60186000	Weak transcription	Pancreas	Pancrea
5	chr12:60132400-60165600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:60137400-60161000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:60138600-60168400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:60138800-60173200	Weak transcription	Aorta	Aorta
9	chr12:60141800-60161000	Weak transcription	Primary B cells from cord blood	blood
10	chr12:60152000-60182200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:60158000-60160800	Weak transcription	GM12878-XiMat	blood
12	chr12:60158000-60161000	Weak transcription	Primary T cells from cord blood	blood

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