Variant report

Variant	rs34347654
Chromosome Location	chr18:61613411-61613412
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs11173153	0.80[EUR][1000 genomes]
rs11173157	0.80[EUR][1000 genomes]
rs11173167	0.83[EUR][1000 genomes]
rs11173168	0.83[EUR][1000 genomes]
rs11534930	0.84[EUR][1000 genomes]
rs12579986	0.80[EUR][1000 genomes]
rs12718000	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12811123	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12811364	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12812257	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12816372	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817723	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12819402	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821998	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12823549	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12823946	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824130	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824156	0.84[EUR][1000 genomes]
rs12824305	0.87[EUR][1000 genomes]
rs12824312	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824395	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12824600	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824910	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12825732	0.83[ASN][1000 genomes]
rs12826493	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826693	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826770	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826963	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827043	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12827221	0.82[EUR][1000 genomes]
rs12827292	0.84[EUR][1000 genomes]
rs12827420	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12828834	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830142	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831305	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613477	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613544	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617982	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1619563	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693597	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693598	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693600	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693601	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693602	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693603	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693604	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693605	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693607	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120243	0.83[EUR][1000 genomes]
rs17122972	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122978	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122980	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122985	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122992	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17649791	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795883	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795889	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795890	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795893	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795895	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795898	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882504	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882505	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178671	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178672	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2222878	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2222879	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244244	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706280	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706282	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706283	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706284	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706286	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2706287	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706289	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706290	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706291	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706292	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706293	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706294	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706300	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706302	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706305	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706307	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706308	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706310	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706311	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706312	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706317	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706318	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706320	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706321	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706322	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711651	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711652	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711654	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711658	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711660	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711662	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711663	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711664	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711667	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711669	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711673	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2711674	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711675	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711676	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711678	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711679	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711680	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711683	1.00[ASN][1000 genomes]
rs2711686	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711687	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2711688	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711689	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711690	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2711692	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2711693	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2952446	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34038000	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34040471	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34089003	0.84[EUR][1000 genomes]
rs34149184	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34153651	0.84[EUR][1000 genomes]
rs34183506	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34272110	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34659184	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34790713	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34860779	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34861412	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35096295	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203350	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35397369	0.84[EUR][1000 genomes]
rs35399130	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35506739	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613243	0.83[EUR][1000 genomes]
rs35755432	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35889150	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36072512	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36077154	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36159000	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763979	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131430	0.80[EUR][1000 genomes]
rs4432061	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5012615	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59085053	0.92[ASN][1000 genomes]
rs61933773	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933775	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933776	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933793	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61933804	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933838	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933843	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933848	0.84[EUR][1000 genomes]
rs61935606	0.80[EUR][1000 genomes]
rs62625022	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581273	0.80[EUR][1000 genomes]
rs7132933	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7137002	0.80[EUR][1000 genomes]
rs7298553	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7484893	0.83[EUR][1000 genomes]
rs7967144	0.84[EUR][1000 genomes]
rs7971727	0.84[EUR][1000 genomes]
rs7972637	0.80[EUR][1000 genomes]
rs7976838	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325168	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061206	chr18:61366124-61916842	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv543733	chr18:61366124-61916842	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv16044	chr18:61382356-61945364	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv909693	chr18:61509286-61645164	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv525889	chr18:61512366-61615344	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv833673	chr18:61564306-61764255	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:61604400-61616400	Weak transcription	Gastric	stomach

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