Variant report
Variant | rs12826196 |
---|---|
Chromosome Location | chr12:104651476-104651477 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:104647499..104652832-chr12:104679215..104682822,7 | K562 | blood: | |
2 | chr12:104648960..104654527-chr12:104679132..104682678,7 | MCF-7 | breast: | |
3 | chr12:104643341..104646270-chr12:104650257..104651835,2 | MCF-7 | breast: | |
4 | chr12:104648718..104651563-chr12:104680805..104682351,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000198431 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11111937 | 1.00[ASN][1000 genomes] |
rs11111942 | 1.00[ASN][1000 genomes] |
rs11111969 | 1.00[ASN][1000 genomes] |
rs11112015 | 1.00[ASN][1000 genomes] |
rs11612813 | 1.00[ASN][1000 genomes] |
rs12809773 | 1.00[ASN][1000 genomes] |
rs12812451 | 1.00[ASN][1000 genomes] |
rs12828655 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2706272 | 1.00[ASN][1000 genomes] |
rs34309392 | 1.00[ASN][1000 genomes] |
rs34811234 | 1.00[ASN][1000 genomes] |
rs34863477 | 1.00[ASN][1000 genomes] |
rs35453744 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs35473944 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35653685 | 1.00[ASN][1000 genomes] |
rs35822062 | 1.00[ASN][1000 genomes] |
rs35844634 | 1.00[ASN][1000 genomes] |
rs35945288 | 1.00[ASN][1000 genomes] |
rs4964733 | 1.00[ASN][1000 genomes] |
rs4964778 | 1.00[ASN][1000 genomes] |
rs61937668 | 1.00[ASN][1000 genomes] |
rs6539127 | 1.00[ASN][1000 genomes] |
rs66554757 | 1.00[ASN][1000 genomes] |
rs71466293 | 1.00[ASN][1000 genomes] |
rs71466302 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7294701 | 1.00[ASN][1000 genomes] |
rs7305137 | 1.00[ASN][1000 genomes] |
rs7311508 | 1.00[ASN][1000 genomes] |
rs7313536 | 1.00[ASN][1000 genomes] |
rs7978310 | 1.00[ASN][1000 genomes] |
rs7979945 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv899493 | chr12:104548613-104703228 | Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
2 | nsv899494 | chr12:104561521-104806232 | Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
3 | nsv1046606 | chr12:104606617-104763734 | Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
4 | nsv1038609 | chr12:104613847-104764981 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
5 | nsv541587 | chr12:104613847-104764981 | Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:104649800-104657200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
2 | chr12:104650400-104651600 | Weak transcription | Hela-S3 | cervix |
3 | chr12:104651000-104652800 | Enhancers | A549 | lung |
4 | chr12:104651400-104653000 | Enhancers | Stomach Mucosa | stomach |