The 2.0 version of rSNPBase

Variant report

Variant rs1282947
Chromosome Location chr3:111632614-111632615
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111591600-111633200 Weak transcription Fetal Kidney kidney
2 chr3:111620000-111643200 Weak transcription Esophagus oesophagus
3 chr3:111623400-111641200 Weak transcription Lung lung
4 chr3:111623800-111640200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr3:111624600-111632800 Enhancers Fetal Heart heart
6 chr3:111624600-111643200 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr3:111628400-111641600 Weak transcription Spleen Spleen
8 chr3:111629400-111636200 Weak transcription Psoas Muscle Psoas
9 chr3:111629600-111642800 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr3:111629800-111642800 Weak transcription Stomach Mucosa stomach
11 chr3:111630000-111634200 Strong transcription NHEK skin
12 chr3:111630200-111637400 Weak transcription Aorta Aorta
13 chr3:111630200-111641400 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr3:111630400-111634800 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr3:111630600-111634000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr3:111630600-111634800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr3:111630600-111634800 Weak transcription Small Intestine intestine
18 chr3:111630600-111635600 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr3:111630600-111637000 Weak transcription Fetal Lung lung
20 chr3:111630600-111637600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr3:111630600-111642400 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr3:111630600-111642800 Weak transcription Pancreas Pancrea
23 chr3:111630800-111634200 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr3:111630800-111637000 Weak transcription Primary T cells fromperipheralblood blood
25 chr3:111630800-111645000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr3:111631000-111637200 Weak transcription Fetal Intestine Large intestine
27 chr3:111631000-111639200 Weak transcription Fetal Brain Male brain
28 chr3:111631000-111672000 Weak transcription Fetal Intestine Small intestine
29 chr3:111631000-111673400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr3:111631200-111634400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr3:111631600-111635000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr3:111631800-111632800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr3:111631800-111633000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr3:111631800-111633000 Enhancers H9 Cell Line embryonic stem cell
35 chr3:111631800-111634000 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr3:111631800-111634600 Strong transcription HMEC breast
37 chr3:111631800-111635800 Strong transcription Osteobl bone
38 chr3:111631800-111636200 Strong transcription Liver Liver
39 chr3:111631800-111644800 Strong transcription Placenta Placenta
40 chr3:111632000-111632800 Genic enhancers Left Ventricle heart
41 chr3:111632000-111633000 Enhancers HUES48 Cell Line embryonic stem cell
42 chr3:111632000-111633000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr3:111632000-111634200 Strong transcription NHLF lung
44 chr3:111632000-111634400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr3:111632000-111634600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr3:111632000-111642600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr3:111632000-111643400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
48 chr3:111632200-111632800 Strong transcription Primary B cells from cord blood blood
49 chr3:111632200-111632800 Strong transcription Duodenum Mucosa Duodenum
50 chr3:111632200-111632800 Strong transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015