The 2.0 version of rSNPBase

Variant report

Variant rs1282953
Chromosome Location chr3:111627839-111627840
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111591600-111633200 Weak transcription Fetal Kidney kidney
2 chr3:111604000-111632200 Weak transcription Gastric stomach
3 chr3:111604400-111629400 Weak transcription Ovary ovary
4 chr3:111604400-111632200 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr3:111604800-111632000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr3:111605000-111629800 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr3:111617600-111631800 Weak transcription H9 Cell Line embryonic stem cell
8 chr3:111618200-111628800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr3:111620000-111643200 Weak transcription Esophagus oesophagus
10 chr3:111621800-111632200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr3:111622400-111630400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr3:111622400-111630400 Weak transcription Pancreas Pancrea
13 chr3:111622600-111628400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr3:111622800-111630200 Weak transcription Fetal Intestine Small intestine
15 chr3:111623400-111641200 Weak transcription Lung lung
16 chr3:111623600-111629800 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr3:111623800-111628800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr3:111623800-111629200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr3:111623800-111629200 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr3:111623800-111640200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr3:111624000-111628400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr3:111624000-111628400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr3:111624000-111629400 Weak transcription Colon Smooth Muscle Colon
24 chr3:111624200-111628800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr3:111624200-111629200 Weak transcription NHDF-Ad bronchial
26 chr3:111624200-111629400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr3:111624200-111629400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr3:111624200-111629600 Weak transcription Fetal Brain Male brain
29 chr3:111624600-111628600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr3:111624600-111629400 Weak transcription Rectal Smooth Muscle rectum
31 chr3:111624600-111632800 Enhancers Fetal Heart heart
32 chr3:111624600-111643200 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr3:111624800-111629000 Strong transcription Placenta Placenta
34 chr3:111625400-111628400 Strong transcription Breast Myoepithelial Primary Cells Breast
35 chr3:111625600-111628600 Strong transcription NHEK skin
36 chr3:111625600-111628600 Strong transcription Osteobl bone
37 chr3:111625600-111628800 Weak transcription HUVEC blood vessel
38 chr3:111625800-111630200 Weak transcription Right Atrium heart
39 chr3:111626000-111629200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr3:111626200-111628600 Weak transcription A549 lung
41 chr3:111626200-111629200 Weak transcription NHLF lung
42 chr3:111626200-111629600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr3:111626200-111630200 Weak transcription Fetal Intestine Large intestine
44 chr3:111626400-111628400 Strong transcription Fetal Muscle Leg muscle
45 chr3:111626400-111629400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr3:111626400-111630200 Weak transcription Small Intestine intestine
47 chr3:111626400-111632200 Weak transcription HepG2 liver
48 chr3:111626600-111628200 Strong transcription Hela-S3 cervix
49 chr3:111626600-111628200 Strong transcription HSMM muscle
50 chr3:111626600-111628600 Strong transcription Liver Liver

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Last update: Aug 31, 2015