Variant report

Variant	rs1282940
Chromosome Location	chr3:111621188-111621189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111576794..111579394-chr3:111620810..111622833,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027567	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282943	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282952	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282953	1.00[AMR][1000 genomes]
rs1282954	1.00[AMR][1000 genomes]
rs1282959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282966	1.00[AMR][1000 genomes]
rs1282968	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1283005	1.00[AMR][1000 genomes]
rs1283006	1.00[AMR][1000 genomes]
rs1283009	1.00[AMR][1000 genomes]
rs1283010	1.00[AMR][1000 genomes]
rs1283012	1.00[AMR][1000 genomes]
rs2936820	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2943237	0.95[AFR][1000 genomes]
rs712511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs712513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938295	0.89[AFR][1000 genomes]
rs72940209	0.86[AFR][1000 genomes]
rs774766	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs904636	1.00[AMR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
2	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
3	chr3:111604000-111632200	Weak transcription	Gastric	stomach
4	chr3:111604400-111621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:111604400-111622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
7	chr3:111604400-111629400	Weak transcription	Ovary	ovary
8	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:111604800-111621600	Weak transcription	NHLF	lung
10	chr3:111604800-111622000	Weak transcription	Adipose Nuclei	Adipose
11	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:111609400-111622400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:111609600-111623200	Weak transcription	Fetal Heart	heart
15	chr3:111609800-111623200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:111610000-111623200	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:111610200-111621600	Weak transcription	Left Ventricle	heart
18	chr3:111610200-111622200	Weak transcription	Lung	lung
19	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
20	chr3:111611000-111622000	Weak transcription	Right Ventricle	heart
21	chr3:111615600-111622000	Weak transcription	Fetal Stomach	stomach
22	chr3:111617400-111621200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:111617600-111622200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:111617800-111623200	Weak transcription	Liver	Liver
26	chr3:111617800-111623400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:111618400-111623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:111618600-111621600	Weak transcription	A549	lung
30	chr3:111618800-111622000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:111618800-111626400	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:111619000-111623600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr3:111619400-111621600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:111619400-111621600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:111619600-111621600	Weak transcription	HSMM	muscle
36	chr3:111619800-111624000	Enhancers	HUVEC	blood vessel
37	chr3:111620000-111621200	Weak transcription	Placenta	Placenta
38	chr3:111620000-111621600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:111620000-111621600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:111620000-111622200	Enhancers	NHEK	skin
41	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
42	chr3:111620400-111621200	Enhancers	Fetal Lung	lung
43	chr3:111620400-111622000	Enhancers	NH-A	brain
44	chr3:111620400-111622200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr3:111620400-111622800	Genic enhancers	Hela-S3	cervix
46	chr3:111620400-111624000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:111620600-111622800	Enhancers	Osteobl	bone
48	chr3:111620600-111624200	Enhancers	NHDF-Ad	bronchial
49	chr3:111620600-111624400	Enhancers	HMEC	breast
50	chr3:111620600-111626800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links