Variant report

Variant	rs1282943
Chromosome Location	chr3:111637045-111637046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111636515..111638251-chr3:111642842..111645026,2	MCF-7	breast:
2	chr3:111631571..111633991-chr3:111636308..111638451,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282940	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282952	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282953	1.00[AMR][1000 genomes]
rs1282954	1.00[AMR][1000 genomes]
rs1282959	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282962	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282966	1.00[AMR][1000 genomes]
rs1282968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1283005	1.00[AMR][1000 genomes]
rs1283006	1.00[AMR][1000 genomes]
rs1283009	1.00[AMR][1000 genomes]
rs1283010	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs1283012	1.00[AMR][1000 genomes]
rs2936820	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2943237	0.88[AFR][1000 genomes]
rs712511	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs712513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938295	0.91[AFR][1000 genomes]
rs72940209	0.88[AFR][1000 genomes]
rs774766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs904636	1.00[AMR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111623400-111641200	Weak transcription	Lung	lung
3	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
6	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
8	chr3:111630200-111637400	Weak transcription	Aorta	Aorta
9	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:111630600-111637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
13	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:111631000-111637200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:111631000-111639200	Weak transcription	Fetal Brain Male	brain
16	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
19	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:111632400-111639200	Strong transcription	Placenta Amnion	Placenta Amnion
23	chr3:111632600-111637400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:111632600-111637600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:111632800-111637400	Weak transcription	Gastric	stomach
26	chr3:111632800-111639200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:111633000-111637600	Weak transcription	Ovary	ovary
28	chr3:111633000-111637600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:111633400-111637400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:111634200-111637200	Genic enhancers	NHEK	skin
31	chr3:111634200-111637400	Weak transcription	NHLF	lung
32	chr3:111634400-111637200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:111634400-111637400	Weak transcription	Fetal Kidney	kidney
34	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:111634600-111637600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:111634600-111637600	Genic enhancers	HMEC	breast
37	chr3:111634600-111640200	Genic enhancers	Hela-S3	cervix
38	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:111635200-111637400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:111635200-111637400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:111635200-111638400	Weak transcription	HepG2	liver
42	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:111635400-111637400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:111635400-111637600	Weak transcription	Primary B cells from cord blood	blood
45	chr3:111635600-111637600	Weak transcription	Fetal Stomach	stomach
46	chr3:111635600-111639800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:111635600-111639800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr3:111635800-111637400	Genic enhancers	A549	lung
50	chr3:111635800-111638600	Weak transcription	Right Ventricle	heart

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