Variant report

Variant	rs1282966
Chromosome Location	chr3:111642744-111642745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111633731..111635753-chr3:111641822..111644588,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027567	1.00[AMR][1000 genomes]
rs1282940	1.00[AMR][1000 genomes]
rs1282943	1.00[AMR][1000 genomes]
rs1282952	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1282953	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1282954	1.00[AMR][1000 genomes]
rs1282959	1.00[AMR][1000 genomes]
rs1282962	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1282968	1.00[AMR][1000 genomes]
rs1283005	1.00[AMR][1000 genomes]
rs1283006	1.00[AMR][1000 genomes]
rs1283009	1.00[AMR][1000 genomes]
rs1283010	1.00[AMR][1000 genomes]
rs1283012	1.00[AMR][1000 genomes]
rs1826346	1.00[EUR][1000 genomes]
rs2936820	1.00[AMR][1000 genomes]
rs34081887	1.00[EUR][1000 genomes]
rs34542209	1.00[EUR][1000 genomes]
rs712511	1.00[AMR][1000 genomes]
rs712513	1.00[AMR][1000 genomes]
rs774766	1.00[AMR][1000 genomes]
rs904636	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
5	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
6	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
8	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
10	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:111635800-111642800	Strong transcription	Adipose Nuclei	Adipose
17	chr3:111635800-111643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:111636400-111643200	Weak transcription	Psoas Muscle	Psoas
19	chr3:111637200-111646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:111637400-111647000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:111637800-111642800	Weak transcription	Fetal Thymus	thymus
23	chr3:111638000-111642800	Weak transcription	Gastric	stomach
24	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr3:111638800-111643200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:111638800-111643200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:111639400-111643200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
30	chr3:111640000-111648400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:111640000-111651800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr3:111640200-111643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:111640200-111643400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr3:111640200-111651200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:111640400-111645000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:111640800-111645000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:111641000-111643000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:111641000-111643000	Genic enhancers	Right Ventricle	heart
39	chr3:111641000-111643200	Genic enhancers	Fetal Muscle Leg	muscle
40	chr3:111641000-111643400	Genic enhancers	Placenta Amnion	Placenta Amnion
41	chr3:111641000-111643400	Strong transcription	HepG2	liver
42	chr3:111641000-111643600	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:111641000-111645400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:111641000-111645400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:111641000-111645400	Strong transcription	Fetal Intestine Large	intestine
46	chr3:111641000-111645400	Genic enhancers	NHEK	skin
47	chr3:111641200-111643000	Strong transcription	Fetal Lung	lung
48	chr3:111641200-111643400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:111641200-111643600	Genic enhancers	HMEC	breast
50	chr3:111641200-111645400	Strong transcription	Fetal Stomach	stomach

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