Variant report

Variant	rs1282959
Chromosome Location	chr3:111625907-111625908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111625885-111628452	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr3:111625214-111626408	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282953	1.00[AMR][1000 genomes]
rs1282954	1.00[AMR][1000 genomes]
rs1282962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282966	1.00[AMR][1000 genomes]
rs1282968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1283005	1.00[AMR][1000 genomes]
rs1283006	1.00[AMR][1000 genomes]
rs1283009	1.00[AMR][1000 genomes]
rs1283010	1.00[AMR][1000 genomes]
rs1283012	1.00[AMR][1000 genomes]
rs2936820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2943237	0.88[AFR][1000 genomes]
rs712511	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs712513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938295	0.91[AFR][1000 genomes]
rs72940209	0.88[AFR][1000 genomes]
rs774766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs904636	1.00[AMR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111629400	Weak transcription	Ovary	ovary
4	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
8	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:111618800-111626400	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
12	chr3:111620600-111626800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:111621200-111626400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:111622400-111630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:111622400-111630400	Weak transcription	Pancreas	Pancrea
17	chr3:111622600-111628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:111622800-111630200	Weak transcription	Fetal Intestine Small	intestine
19	chr3:111623400-111626400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:111623400-111641200	Weak transcription	Lung	lung
21	chr3:111623600-111626400	Weak transcription	Left Ventricle	heart
22	chr3:111623600-111626600	Weak transcription	Right Ventricle	heart
23	chr3:111623600-111626800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:111623600-111629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:111623800-111628800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:111623800-111629200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:111623800-111629200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:111624000-111627200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:111624000-111628400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:111624000-111628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:111624000-111629400	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:111624200-111626200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:111624200-111627000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:111624200-111627400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:111624200-111627400	Weak transcription	NH-A	brain
37	chr3:111624200-111628800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:111624200-111629200	Weak transcription	NHDF-Ad	bronchial
39	chr3:111624200-111629400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:111624200-111629400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:111624200-111629600	Weak transcription	Fetal Brain Male	brain
42	chr3:111624400-111626200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:111624600-111626400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:111624600-111628600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:111624600-111629400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:111624600-111632800	Enhancers	Fetal Heart	heart
47	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:111624800-111626200	Enhancers	Liver	Liver
49	chr3:111624800-111626200	Genic enhancers	A549	lung
50	chr3:111624800-111626200	Enhancers	NHLF	lung

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