Variant report

Variant	rs12831009
Chromosome Location	chr12:20844597-20844598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:20844446-20844646	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
SLCO1C1	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12809210	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12809378	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12811837	0.94[EUR][1000 genomes]
rs12819256	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12820620	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1515779	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16915410	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16923129	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34000404	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34167698	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34425791	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35018358	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35123559	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67481714	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71446707	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71446708	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71446709	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71446712	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71446713	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71446714	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71446715	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7306841	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7960372	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048067	chr12:20363755-20874845	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541408	chr12:20363755-20874845	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv557704	chr12:20842041-20893980	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20834200-20846600	Weak transcription	Fetal Stomach	stomach
2	chr12:20838800-20849800	Weak transcription	Hela-S3	cervix

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