Variant report

Variant	rs1284596
Chromosome Location	chr5:115942829-115942830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11749266	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115939000-115943000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:115939800-115949200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:115941000-115949200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:115941800-115944600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:115941800-115949600	Weak transcription	Fetal Stomach	stomach
6	chr5:115942400-115964200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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