Variant report

Variant	rs12855484
Chromosome Location	chr13:94568278-94568279
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12865762	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1330463	0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7328176	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7982823	0.83[MEX][hapmap]
rs8002566	0.90[CHB][hapmap]
rs913941	0.80[CHD][hapmap];0.88[MEX][hapmap]
rs928185	0.80[CHD][hapmap]
rs9561471	0.82[ASN][1000 genomes]
rs9561475	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv933157	chr13:94565760-94586415	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12855484	TGDS	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94561000-94572600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94567000-94569000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:94567200-94568400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:94567200-94568600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:94567200-94568600	Enhancers	NHLF	lung
6	chr13:94567200-94569000	Enhancers	Fetal Stomach	stomach
7	chr13:94567400-94568400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:94567400-94568600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:94567400-94568600	Enhancers	NHDF-Ad	bronchial
10	chr13:94567600-94568600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:94567600-94568800	Enhancers	Ovary	ovary
12	chr13:94567600-94568800	Enhancers	Osteobl	bone
13	chr13:94568200-94571800	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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