Variant report

Variant	rs12864625
Chromosome Location	chr13:63085497-63085498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12428082	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12428375	0.92[EUR][1000 genomes]
rs12428560	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12429317	0.92[EUR][1000 genomes]
rs12429390	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12429397	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12429424	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12431026	0.92[EUR][1000 genomes]
rs12431035	0.92[EUR][1000 genomes]
rs12431064	0.92[EUR][1000 genomes]
rs12862055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12867188	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12870231	0.92[EUR][1000 genomes]
rs12870258	0.91[EUR][1000 genomes]
rs12870727	0.83[EUR][1000 genomes]
rs12870826	0.88[EUR][1000 genomes]
rs12870935	0.83[EUR][1000 genomes]
rs12871366	0.92[EUR][1000 genomes]
rs12871694	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12872004	0.92[EUR][1000 genomes]
rs12875940	0.92[EUR][1000 genomes]
rs12876207	0.92[EUR][1000 genomes]
rs12876281	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12876343	0.88[EUR][1000 genomes]
rs12876465	0.92[EUR][1000 genomes]
rs12876620	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12876700	0.92[EUR][1000 genomes]
rs12876997	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12877105	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12877223	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12877330	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1336141	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17061308	0.92[EUR][1000 genomes]
rs17298039	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34824349	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34909131	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35185476	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35491594	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35869046	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4438182	0.92[EUR][1000 genomes]
rs4883682	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4884420	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4884421	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4884422	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4884423	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71439933	0.92[EUR][1000 genomes]
rs71439935	0.92[EUR][1000 genomes]
rs71439947	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71439948	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71439955	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63083200-63087000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:63083800-63086000	Enhancers	Dnd41	blood
3	chr13:63083800-63086800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:63084400-63087000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:63085000-63086000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr13:63085000-63087000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr13:63085200-63086200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:63085400-63085600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr13:63085400-63085600	Flanking Active TSS	GM12878-XiMat	blood
10	chr13:63085400-63085800	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr13:63085400-63086600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:63085400-63087000	Enhancers	HUES6 Cell Line	embryonic stem cell

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