Variant report

Variant	rs1336141
Chromosome Location	chr13:63098996-63098997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12428082	0.89[EUR][1000 genomes]
rs12428375	0.89[EUR][1000 genomes]
rs12428560	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12429317	0.89[EUR][1000 genomes]
rs12429390	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12429397	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12429424	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12431026	0.89[EUR][1000 genomes]
rs12431035	0.89[EUR][1000 genomes]
rs12431064	0.89[EUR][1000 genomes]
rs12862055	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12864625	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12867188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12870231	0.89[EUR][1000 genomes]
rs12870258	0.88[EUR][1000 genomes]
rs12870727	0.82[EUR][1000 genomes]
rs12870826	0.85[EUR][1000 genomes]
rs12870935	0.82[EUR][1000 genomes]
rs12871366	0.89[EUR][1000 genomes]
rs12871694	0.82[EUR][1000 genomes]
rs12872004	0.89[EUR][1000 genomes]
rs12875940	0.89[EUR][1000 genomes]
rs12876207	0.89[EUR][1000 genomes]
rs12876281	0.87[EUR][1000 genomes]
rs12876343	0.85[EUR][1000 genomes]
rs12876465	0.89[EUR][1000 genomes]
rs12876620	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12876700	0.89[EUR][1000 genomes]
rs12876997	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12877105	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12877223	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12877330	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17061308	0.89[EUR][1000 genomes]
rs17298039	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34824349	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34909131	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35185476	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35491594	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35869046	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4438182	0.89[EUR][1000 genomes]
rs4883682	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4884420	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4884421	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4884422	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4884423	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71439933	0.89[EUR][1000 genomes]
rs71439935	0.89[EUR][1000 genomes]
rs71439947	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71439948	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71439955	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv561895	chr13:63098996-63147070	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63098400-63099400	Flanking Active TSS	GM12878-XiMat	blood
2	chr13:63098600-63099000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:63098600-63099200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr13:63098600-63099400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr13:63098800-63099400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links