Variant report
| Variant | rs12865751 |
|---|---|
| Chromosome Location | chr13:87071378-87071379 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SLITRK6-13 | chr13:87071264-87071414 | NONHSAT034578 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10507961 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10507962 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12428918 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12876177 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1502070 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17650224 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17650379 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34060192 | 0.89[EUR][1000 genomes] |
| rs34618989 | 0.89[EUR][1000 genomes] |
| rs35151821 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs35482231 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs35581488 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs35870429 | 0.89[EUR][1000 genomes] |
| rs4772408 | 0.88[ASN][1000 genomes] |
| rs56903670 | 0.89[EUR][1000 genomes] |
| rs57073992 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60897284 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs66846950 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs71442123 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs71442127 | 0.89[EUR][1000 genomes] |
| rs71442128 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047136 | chr13:86979109-87555131 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2763045 | chr13:87005617-87079364 | Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1048247 | chr13:87041270-87073440 | Enhancers Weak transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1039541 | chr13:87049807-87087605 | Enhancers Weak transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1041124 | chr13:87049807-87100950 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv1044671 | chr13:87061837-87099841 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv1044558 | chr13:87061837-87100950 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 8 | nsv1047019 | chr13:87068836-87134263 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
