Variant report

Variant	rs1286635
Chromosome Location	chr1:62196368-62196369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1151760	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1151763	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1151765	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1151774	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11578760	0.82[ASN][1000 genomes]
rs12753030	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12754462	0.84[EUR][1000 genomes]
rs1286623	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1286636	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1286639	0.82[ASN][1000 genomes]
rs1390450	0.84[ASN][1000 genomes]
rs1692130	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2787461	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6587945	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6686930	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62191400-62207400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:62191600-62197000	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links