Variant report

Variant	rs1286636
Chromosome Location	chr1:62202728-62202729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1151760	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1151763	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1151765	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1151774	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11578760	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12753030	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12754462	0.92[EUR][1000 genomes]
rs1286623	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1286635	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1390450	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1692130	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2787461	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6587945	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6686930	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62191400-62207400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:62201200-62203000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:62201400-62202800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:62201600-62202800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr1:62202200-62206400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:62202200-62207000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr1:62202200-62207200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:62202200-62207200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:62202200-62207200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:62202400-62207200	Weak transcription	Primary T cells from cord blood	blood
11	chr1:62202400-62207200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:62202400-62207200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:62202600-62207200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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