Variant report

Variant	rs12866434
Chromosome Location	chr13:50413158-50413159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50411667..50413611-chr13:50419305..50421241,2	K562	blood:
2	chr13:50411667..50415006-chr13:50418421..50422258,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12583604	0.98[ASN][1000 genomes]
rs12585879	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851165	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851167	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942876	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942877	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7983195	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993059	0.86[ASN][1000 genomes]
rs9535369	0.98[ASN][1000 genomes]
rs9535371	0.96[ASN][1000 genomes]
rs9596198	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12866434	EBPL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
2	chr13:50405800-50414200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:50410400-50413400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:50410600-50415000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:50410800-50413200	Enhancers	Osteobl	bone
6	chr13:50411200-50414400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:50411200-50414600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:50411400-50414200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:50411400-50414400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:50411400-50414600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:50411600-50414600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:50411800-50413200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:50411800-50414200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:50412200-50415200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr13:50412600-50415400	Enhancers	HepG2	liver
17	chr13:50412800-50413200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr13:50412800-50413200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:50412800-50413400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr13:50412800-50413400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:50412800-50413400	Enhancers	Fetal Intestine Large	intestine
22	chr13:50412800-50413600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr13:50412800-50413600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr13:50412800-50413600	Enhancers	Fetal Intestine Small	intestine
25	chr13:50412800-50415000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr13:50413000-50413200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:50413000-50413400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr13:50413000-50414200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr13:50413000-50414400	Weak transcription	NH-A	brain
30	chr13:50413000-50415200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links