Variant report

Variant	rs3851167
Chromosome Location	chr13:50409275-50409276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12583604	0.98[ASN][1000 genomes]
rs12585879	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12866434	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851165	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903768	0.82[JPT][hapmap]
rs4942876	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942877	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7983195	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993059	0.94[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs9526599	0.80[CEU][hapmap]
rs9535369	0.98[ASN][1000 genomes]
rs9535371	0.96[ASN][1000 genomes]
rs9596198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs3851167	MED4	cis	cerebellum	SCAN
rs3851167	EBPL	cis	Artery Tibial	GTEx
rs3851167	EBPL	Cis_1M	lymphoblastoid	RTeQTL
rs3851167	C13orf18	cis	parietal	SCAN
rs3851167	P2RX7	trans	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
2	chr13:50402200-50412800	Weak transcription	Fetal Intestine Small	intestine
3	chr13:50403000-50410200	Weak transcription	HepG2	liver
4	chr13:50404000-50410600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:50405800-50414200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:50406000-50410400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:50407600-50409800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:50407800-50410600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:50407800-50410600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:50407800-50410800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:50407800-50410800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:50408000-50410200	Weak transcription	Esophagus	oesophagus
13	chr13:50408600-50410400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:50408800-50410200	Weak transcription	HMEC	breast
15	chr13:50408800-50410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:50408800-50410400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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