Variant report

Variant	rs1287260
Chromosome Location	chr5:36059151-36059152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1287261	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1287262	0.86[CEU][hapmap]
rs1287263	0.86[CEU][hapmap];0.83[GIH][hapmap]
rs1287265	0.86[CEU][hapmap]
rs2047176	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4091908	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs583595	0.87[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs586382	0.87[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs667385	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921020	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:36052400-36061200	Enhancers	Fetal Thymus	thymus
7	chr5:36053200-36059600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:36054400-36066200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:36055000-36059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:36055200-36059200	Enhancers	Dnd41	blood
11	chr5:36055200-36059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:36056600-36066200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:36056800-36059600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:36058400-36061200	Enhancers	Thymus	Thymus
15	chr5:36058600-36059600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:36059000-36060000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:36059000-36060000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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