Variant report

Variant	rs1287262
Chromosome Location	chr5:36057228-36057229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10038804	0.93[CEU][hapmap]
rs1287260	0.86[CEU][hapmap]
rs1287263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287265	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1290465	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs267771	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs267772	0.82[JPT][hapmap]
rs583595	0.83[YRI][hapmap]
rs586382	0.83[YRI][hapmap]
rs611103	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs651440	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs895362	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs921020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:36052400-36061200	Enhancers	Fetal Thymus	thymus
7	chr5:36053200-36059600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:36054400-36066200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:36055000-36059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:36055200-36059200	Enhancers	Dnd41	blood
11	chr5:36055200-36059800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:36056600-36066200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:36056800-36059600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:36057000-36057800	Enhancers	Liver	Liver
15	chr5:36057200-36058400	Weak transcription	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links