Variant report

Variant	rs267771
Chromosome Location	chr5:36064813-36064814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36063741..36065789-chr5:36066505..36068738,2	K562	blood:
2	chr5:36058460..36062314-chr5:36063254..36065361,3	K562	blood:

Variant related genes	Relation type
ENSG00000168671	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10037789	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10043359	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1287262	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs1287263	0.82[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs1287268	0.83[EUR][1000 genomes]
rs1593074	0.89[CEU][hapmap]
rs2047176	0.89[GIH][hapmap]
rs2441080	0.91[EUR][1000 genomes]
rs267772	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs267775	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267776	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs267778	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs267779	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs267782	0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs267783	0.83[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs267785	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs267789	0.81[ASN][1000 genomes]
rs267793	0.81[ASN][1000 genomes]
rs33671	0.94[MEX][hapmap]
rs583595	0.89[GIH][hapmap]
rs586382	0.89[GIH][hapmap]
rs921020	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:36054400-36066200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:36056600-36066200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36061200-36065200	Weak transcription	Thymus	Thymus
7	chr5:36061400-36071000	Weak transcription	Dnd41	blood
8	chr5:36061800-36065400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:36063600-36065200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:36064400-36065000	Enhancers	Fetal Thymus	thymus
11	chr5:36064600-36065800	Weak transcription	H1 Cell Line	embryonic stem cell

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