Variant report

Variant	rs267778
Chromosome Location	chr5:36071062-36071063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36069530..36071342-chr5:36073947..36076016,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10037789	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10043359	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1287263	0.87[GIH][hapmap]
rs1287268	0.81[AMR][1000 genomes]
rs1593074	0.89[CEU][hapmap]
rs171600	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2047176	0.85[GIH][hapmap]
rs267757	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267771	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs267772	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs267775	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267776	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs267779	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267782	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267783	1.00[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267785	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267789	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267793	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs33670	0.82[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33671	0.93[ASW][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs43189	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4869469	0.81[ASN][1000 genomes]
rs583595	0.85[GIH][hapmap]
rs586382	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36071800	Weak transcription	Spleen	Spleen
2	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:36067800-36071200	Weak transcription	Thymus	Thymus
4	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:36068000-36073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:36070600-36072000	Enhancers	Pancreas	Pancrea
7	chr5:36070800-36071200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:36070800-36071400	Enhancers	Fetal Thymus	thymus
9	chr5:36071000-36071200	Enhancers	Primary B cells from peripheral blood	blood
10	chr5:36071000-36071200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr5:36071000-36071200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:36071000-36071200	Flanking Active TSS	Liver	Liver
13	chr5:36071000-36071200	Enhancers	GM12878-XiMat	blood
14	chr5:36071000-36071400	Active TSS	Duodenum Mucosa	Duodenum
15	chr5:36071000-36071400	Enhancers	Ovary	ovary
16	chr5:36071000-36071600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:36071000-36071600	Active TSS	NHLF	lung
18	chr5:36071000-36071800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:36071000-36071800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr5:36071000-36071800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:36071000-36071800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:36071000-36072000	Flanking Active TSS	Dnd41	blood

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