Variant report

Variant	rs267775
Chromosome Location	chr5:36069248-36069249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10037789	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10043359	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1287268	0.81[AMR][1000 genomes]
rs1593074	0.90[CEU][hapmap]
rs171600	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs267757	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs267771	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267772	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs267776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs267778	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267779	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267782	0.96[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267783	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267785	0.87[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267789	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267793	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33670	0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs33671	0.82[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs43189	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36061400-36071000	Weak transcription	Dnd41	blood
2	chr5:36067000-36070600	Weak transcription	Pancreas	Pancrea
3	chr5:36067200-36071800	Weak transcription	Spleen	Spleen
4	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:36067400-36071000	Weak transcription	Liver	Liver
6	chr5:36067800-36070800	Weak transcription	Fetal Thymus	thymus
7	chr5:36067800-36071000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:36067800-36071200	Weak transcription	Thymus	Thymus
9	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:36068000-36073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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