Variant report

Variant	rs267793
Chromosome Location	chr5:36079075-36079076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10037789	0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10043359	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs171600	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs267757	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267771	0.87[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.81[ASN][1000 genomes]
rs267772	0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs267775	0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267776	0.87[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs267778	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267779	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267782	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267783	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs267789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33670	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33671	0.85[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs43189	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4869469	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs267793	OSMR	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36073000-36079400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36074400-36079400	Weak transcription	Dnd41	blood
4	chr5:36074400-36079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:36074400-36079600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:36074400-36079600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:36074400-36079600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:36074400-36082000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:36077800-36079400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:36077800-36079400	Enhancers	Brain Cingulate Gyrus	brain
11	chr5:36078200-36079800	Enhancers	Brain Substantia Nigra	brain
12	chr5:36078600-36079400	Enhancers	Brain Angular Gyrus	brain
13	chr5:36078600-36079400	Weak transcription	Spleen	Spleen
14	chr5:36078600-36079800	Enhancers	Brain Hippocampus Middle	brain
15	chr5:36078800-36079200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:36078800-36079600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:36079000-36079400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:36079000-36079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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