Variant report

Variant	rs267782
Chromosome Location	chr5:36071872-36071873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10037789	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10043359	0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs171600	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs267757	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267771	0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs267772	0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs267775	0.96[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs267776	0.96[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs267778	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267779	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267785	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267789	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs267793	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs33670	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33671	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs43189	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4869469	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:36068000-36073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:36070600-36072000	Enhancers	Pancreas	Pancrea
5	chr5:36071000-36072000	Flanking Active TSS	Dnd41	blood
6	chr5:36071400-36072000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:36071400-36072000	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr5:36071600-36072000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:36071600-36072000	Flanking Active TSS	Liver	Liver
10	chr5:36071600-36072000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr5:36071600-36072000	Enhancers	Thymus	Thymus
12	chr5:36071800-36072000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr5:36071800-36072000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr5:36071800-36072000	Enhancers	Primary B cells from peripheral blood	blood
15	chr5:36071800-36072000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr5:36071800-36072000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr5:36071800-36072000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:36071800-36072000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:36071800-36072000	Enhancers	Placenta	Placenta
20	chr5:36071800-36072000	Enhancers	Fetal Thymus	thymus
21	chr5:36071800-36072000	Enhancers	GM12878-XiMat	blood
22	chr5:36071800-36072000	Active TSS	Hela-S3	cervix
23	chr5:36071800-36072200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr5:36071800-36072200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:36071800-36072200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr5:36071800-36072200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:36071800-36072200	Enhancers	Ovary	ovary
28	chr5:36071800-36072200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr5:36071800-36072200	Enhancers	Spleen	Spleen
30	chr5:36071800-36073400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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