Variant report

Variant	rs1287277
Chromosome Location	chr5:36047519-36047520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1287275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247611	0.82[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs2453301	0.82[CEU][hapmap]
rs36063984	0.97[EUR][1000 genomes]
rs604328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716282	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36031200-36047800	Weak transcription	Fetal Thymus	thymus
2	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:36041600-36048800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:36046800-36051000	Weak transcription	Dnd41	blood
8	chr5:36047200-36048600	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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