Variant report

Variant	rs36063984
Chromosome Location	chr5:36052654-36052655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1287275	1.00[EUR][1000 genomes]
rs1287277	0.97[EUR][1000 genomes]
rs1287279	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2247611	0.85[EUR][1000 genomes]
rs604328	1.00[EUR][1000 genomes]
rs716282	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:36051000-36054400	Enhancers	Dnd41	blood
7	chr5:36052200-36057200	Enhancers	Thymus	Thymus
8	chr5:36052400-36053200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:36052400-36053200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:36052400-36061200	Enhancers	Fetal Thymus	thymus
11	chr5:36052600-36053000	Enhancers	HMEC	breast
12	chr5:36052600-36053000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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