Variant report

Variant	rs12873384
Chromosome Location	chr13:96581009-96581010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96575800..96578505-chr13:96580994..96583120,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17268589	1.00[AFR][1000 genomes]
rs17268596	1.00[AFR][1000 genomes]
rs35574277	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900935	chr13:96497070-96631221	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96495000-96590800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:96523200-96581800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr13:96536200-96587200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:96542400-96581600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr13:96543000-96581600	Weak transcription	Fetal Lung	lung
6	chr13:96543000-96581800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:96543000-96586800	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:96549400-96586400	Weak transcription	Hela-S3	cervix
9	chr13:96558400-96586600	Weak transcription	Right Ventricle	heart
10	chr13:96559600-96583000	Weak transcription	Pancreas	Pancrea
11	chr13:96559600-96586400	Weak transcription	A549	lung
12	chr13:96559800-96583400	Weak transcription	Esophagus	oesophagus
13	chr13:96559800-96588600	Weak transcription	Gastric	stomach
14	chr13:96560000-96581400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:96560000-96581600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:96566400-96581600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:96566800-96587000	Weak transcription	Colon Smooth Muscle	Colon
18	chr13:96567600-96581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:96568400-96581600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr13:96568600-96581600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:96568600-96582000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:96568600-96582800	Weak transcription	Left Ventricle	heart
23	chr13:96568600-96583000	Weak transcription	Ovary	ovary
24	chr13:96571000-96588600	Weak transcription	Psoas Muscle	Psoas
25	chr13:96574600-96581600	Weak transcription	HSMM	muscle
26	chr13:96575800-96581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:96577000-96581600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr13:96577000-96581800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr13:96577000-96623200	Weak transcription	NHLF	lung
30	chr13:96577200-96581400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr13:96577200-96581600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr13:96577200-96581600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:96577200-96581800	Weak transcription	Fetal Heart	heart
34	chr13:96577200-96582000	Weak transcription	HSMMtube	muscle
35	chr13:96577200-96582800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr13:96577200-96583000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr13:96577200-96585600	Weak transcription	NHDF-Ad	bronchial
38	chr13:96577200-96587600	Weak transcription	HepG2	liver
39	chr13:96577200-96598000	Weak transcription	HMEC	breast
40	chr13:96577600-96582000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr13:96577800-96608800	Weak transcription	NHEK	skin
42	chr13:96578800-96581600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr13:96579000-96581600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:96579000-96581600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr13:96579000-96581600	Weak transcription	Fetal Kidney	kidney
46	chr13:96579000-96581800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr13:96579000-96581800	Weak transcription	Osteobl	bone
48	chr13:96579000-96587200	Weak transcription	NH-A	brain
49	chr13:96579000-96587600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr13:96579600-96581600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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