Variant report

Variant	rs17268596
Chromosome Location	chr13:96451033-96451034
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12871416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12873384	1.00[AFR][1000 genomes]
rs17268589	1.00[AFR][1000 genomes]
rs33949518	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492818	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7983958	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96405400-96452600	Weak transcription	Psoas Muscle	Psoas
2	chr13:96405600-96455800	Weak transcription	Fetal Heart	heart
3	chr13:96430000-96457400	Weak transcription	Brain Germinal Matrix	brain
4	chr13:96433000-96453000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:96436200-96452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:96437000-96451400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:96438800-96451200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:96439800-96454200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr13:96441800-96451400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:96443800-96465600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:96443800-96466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:96444400-96452200	Weak transcription	Fetal Brain Female	brain
13	chr13:96444400-96453000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr13:96444400-96461600	Weak transcription	Esophagus	oesophagus
15	chr13:96444400-96461800	Weak transcription	Ovary	ovary
16	chr13:96444400-96477600	Weak transcription	Brain Angular Gyrus	brain
17	chr13:96444400-96477600	Weak transcription	NHLF	lung
18	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
19	chr13:96445000-96451800	Weak transcription	A549	lung
20	chr13:96445000-96453000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr13:96445000-96455800	Weak transcription	HMEC	breast
22	chr13:96445000-96458400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr13:96445200-96451400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr13:96445600-96451400	Weak transcription	Fetal Kidney	kidney
25	chr13:96445600-96452200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:96445600-96454800	Weak transcription	Lung	lung
27	chr13:96445600-96461600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:96445600-96461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:96445600-96461800	Weak transcription	Pancreas	Pancrea
30	chr13:96445600-96477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr13:96445800-96453800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr13:96445800-96455400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr13:96445800-96461600	Weak transcription	Aorta	Aorta
34	chr13:96445800-96490000	Weak transcription	HepG2	liver
35	chr13:96446000-96455600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:96446000-96457400	Weak transcription	Fetal Intestine Small	intestine
37	chr13:96446200-96452200	Weak transcription	Fetal Stomach	stomach
38	chr13:96446200-96452200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr13:96446200-96453400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr13:96446200-96456600	Weak transcription	Fetal Muscle Leg	muscle
41	chr13:96446200-96461600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:96446200-96461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:96446200-96477400	Weak transcription	Gastric	stomach
44	chr13:96446400-96464800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr13:96446400-96466000	Weak transcription	NHEK	skin
46	chr13:96446600-96451800	Weak transcription	Adipose Nuclei	Adipose
47	chr13:96446800-96451400	Weak transcription	Fetal Lung	lung
48	chr13:96446800-96452000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr13:96446800-96452400	Weak transcription	Placenta	Placenta
50	chr13:96446800-96452800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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