Variant report

Variant	rs12873628
Chromosome Location	chr13:93245226-93245227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93228704..93231280-chr13:93244636..93246589,2	K562	blood:
2	chr13:93239441..93241282-chr13:93243358..93246223,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11617429	1.00[ASW][hapmap];0.96[GIH][hapmap];0.88[TSI][hapmap]
rs11620216	0.87[GIH][hapmap];0.82[EUR][1000 genomes]
rs12869397	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17267214	0.87[GIH][hapmap];0.82[EUR][1000 genomes]
rs34032117	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35459828	0.86[EUR][1000 genomes]
rs4083788	0.80[ASN][1000 genomes]
rs4324007	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes]
rs4771860	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56106244	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56262326	0.80[ASN][1000 genomes]
rs57896578	0.80[ASN][1000 genomes]
rs6492619	0.86[CEU][hapmap];0.88[CHB][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap]
rs74107075	0.80[ASN][1000 genomes]
rs74107076	0.80[ASN][1000 genomes]
rs9523723	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9584048	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456070	chr13:93208593-93298523	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv562730	chr13:93208593-93298523	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562731	chr13:93240822-93245600	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv562732	chr13:93240822-93245798	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1124	chr13:93242968-93289282	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv562733	chr13:93243648-93245482	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv562734	chr13:93243648-93245798	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3519352	chr13:93244063-93246267	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3519374	chr13:93244471-93246033	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3519363	chr13:93244547-93246069	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv13490	chr13:93244573-93245965	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv562735	chr13:93244597-93245482	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv562736	chr13:93244597-93245600	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv562737	chr13:93244597-93245798	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv562738	chr13:93244597-93245898	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv562739	chr13:93244700-93245600	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv562740	chr13:93244700-93245755	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv562741	chr13:93244700-93245898	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv562742	chr13:93244802-93245600	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv562743	chr13:93244880-93245798	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv562744	chr13:93244880-93245898	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93237200-93277400	Weak transcription	Right Atrium	heart

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