Variant report
Variant | nsv562732 |
---|---|
Chromosome Location | chr13:93240822-93245798 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:93239441..93241282-chr13:93243358..93246223,2 | K562 | blood: | |
2 | chr13:93239441..93241282-chr13:93243358..93246223,2 | K562 | blood: | |
3 | chr13:93245624..93248556-chr13:93249353..93251806,3 | K562 | blood: | |
4 | chr13:93228704..93231280-chr13:93244636..93246589,2 | K562 | blood: |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs3901973 | chr13:93240822-93240823 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs145893126 | chr13:93240857-93240858 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs181325934 | chr13:93240892-93240893 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs142686180 | chr13:93240925-93240926 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs538885096 | chr13:93240963-93240964 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs9589592 | chr13:93240992-93240993 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs9561092 | chr13:93241022-93241023 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
8 | rs554906145 | chr13:93241030-93241031 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs537099622 | chr13:93241031-93241032 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs557042630 | chr13:93241034-93241035 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs146943670 | chr13:93241052-93241053 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs184422930 | chr13:93241081-93241082 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs3901972 | chr13:93241085-93241086 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
14 | rs3902386 | chr13:93241129-93241130 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
15 | rs567899374 | chr13:93241136-93241137 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs544889598 | chr13:93241154-93241155 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs138083097 | chr13:93241188-93241189 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs530915058 | chr13:93241189-93241190 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs544293340 | chr13:93241203-93241204 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs560984975 | chr13:93241234-93241235 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs3901971 | chr13:93241250-93241251 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs547298333 | chr13:93241258-93241259 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs567069533 | chr13:93241259-93241260 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs532803089 | chr13:93241312-93241313 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs552502810 | chr13:93241321-93241322 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs190100184 | chr13:93241364-93241365 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs537183794 | chr13:93241381-93241382 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs557077575 | chr13:93241393-93241394 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs567300323 | chr13:93241402-93241403 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs370335764 | chr13:93241415-93241416 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs182321781 | chr13:93241416-93241417 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs552870868 | chr13:93241422-93241423 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs117328956 | chr13:93241515-93241516 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs573063455 | chr13:93241542-93241543 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs545241953 | chr13:93241549-93241550 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs187374090 | chr13:93241572-93241573 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs374890672 | chr13:93241576-93241577 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs149539596 | chr13:93241580-93241581 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs77271653 | chr13:93241587-93241588 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs191010194 | chr13:93241687-93241688 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs143991318 | chr13:93241700-93241701 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs9556193 | chr13:93241730-93241731 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs4624030 | chr13:93241744-93241745 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
44 | rs76642612 | chr13:93241749-93241750 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs180673017 | chr13:93241773-93241774 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs563110991 | chr13:93241781-93241782 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs531921148 | chr13:93241798-93241799 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs78429585 | chr13:93241819-93241820 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs142008449 | chr13:93241834-93241835 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs373787223 | chr13:93241902-93241903 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Prostate cancer | 16705090 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Cancer | 20164919 | CNVD |
Autism | 22495311 | CNVD |
Chordoma | 21602918 | CNVD |
Bladder cancer | 21949216 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Chronic lymphocytic leukemia | 21518781 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Intracranial aneurysm | 19064780 | CNVD |
Breast cancer | 19287154 | CNVD |
Acute myeloid leukemia | 18379011 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Ependymoma | 16718352 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Colorectal cancer | 16272173 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Myoepithelioma | 18604193 | CNVD |
Breast cancer | 17133270 | CNVD |
Prostate cancer | 18632612 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Melanoma | 18172304 | CNVD |
Prostate cancer | 16573809 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Gastric cancer | 17908304 | CNVD |
Splenic marginal zone lymphoma | 18492102 | CNVD |
Liposarcoma | 21253554 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Prostate cancer | 21965145 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Cancer | 21220470 | CNVD |
Cancer | 21183584 | CNVD |
Omodysplasia | 19481194 | CNVD |
Breast cancer | 22032731 | CNVD |
Mantle cell lymphoma | 19690137 | CNVD |
Rhabdomyosarcoma | 17210683 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Breast cancer | 21364760 | CNVD |
Medulloblastoma | 19270706 | CNVD |
Myelofibrosis | 22110671 | CNVD |
coloboma | 21285886 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute myeloid leukemia | 19651601 | CNVD |
Effusion lymphoma | 18079361 | CNVD |
Developmental delay | 21147756 | CNVD |
Cancer | 20164920 | CNVD |
Melanoma | 20877625 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:93237200-93277400 | Weak transcription | Right Atrium | heart |
2 | chr13:93242200-93242600 | Enhancers | Hela-S3 | cervix |
3 | chr13:93242200-93243600 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
4 | chr13:93242200-93243800 | Enhancers | NH-A | brain |
5 | chr13:93242400-93242800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
6 | chr13:93242400-93242800 | Enhancers | HUES64 Cell Line | embryonic stem cell |
7 | chr13:93242400-93243000 | Enhancers | NHEK | skin |
8 | chr13:93242600-93243000 | Flanking Active TSS | Hela-S3 | cervix |
9 | chr13:93242600-93243600 | Enhancers | Muscle Satellite Cultured Cells | -- |
10 | chr13:93242600-93243600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
11 | chr13:93243000-93243600 | Enhancers | Hela-S3 | cervix |