Variant report
| Variant | rs9589592 |
|---|---|
| Chromosome Location | chr13:93240992-93240993 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93239441..93241282-chr13:93243358..93246223,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10161676 | 1.00[JPT][hapmap] |
| rs12323052 | 1.00[JPT][hapmap] |
| rs12323068 | 1.00[JPT][hapmap] |
| rs34547215 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4773691 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9584044 | 1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9584045 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9584046 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9584049 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9589591 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589596 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589606 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456070 | chr13:93208593-93298523 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv562730 | chr13:93208593-93298523 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1808762 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | esv1842146 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv562731 | chr13:93240822-93245600 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv562732 | chr13:93240822-93245798 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93237200-93277400 | Weak transcription | Right Atrium | heart |
