Variant report

Variant	rs3901972
Chromosome Location	chr13:93241085-93241086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs3901971	0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3901973	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4371028	1.00[AMR][1000 genomes]
rs4444192	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4460938	1.00[AMR][1000 genomes]
rs59625209	1.00[EUR][1000 genomes]
rs7336031	1.00[EUR][1000 genomes]
rs74107278	1.00[EUR][1000 genomes]
rs74107281	1.00[EUR][1000 genomes]
rs74107285	1.00[EUR][1000 genomes]
rs7996912	1.00[EUR][1000 genomes]
rs8001468	1.00[AMR][1000 genomes]
rs9516094	1.00[AMR][1000 genomes]
rs9523722	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556194	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456070	chr13:93208593-93298523	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv562730	chr13:93208593-93298523	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1808762	chr13:93232301-93241744	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv1842146	chr13:93232301-93241744	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv562731	chr13:93240822-93245600	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv562732	chr13:93240822-93245798	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93237200-93277400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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