Variant report
| Variant | rs4444192 |
|---|---|
| Chromosome Location | chr13:93239703-93239704 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93239441..93241282-chr13:93243358..93246223,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs3901971 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3901972 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3901973 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4371028 | 1.00[AMR][1000 genomes] |
| rs4460938 | 1.00[AMR][1000 genomes] |
| rs59625209 | 1.00[EUR][1000 genomes] |
| rs7336031 | 1.00[EUR][1000 genomes] |
| rs74107278 | 1.00[EUR][1000 genomes] |
| rs74107281 | 1.00[EUR][1000 genomes] |
| rs74107285 | 1.00[EUR][1000 genomes] |
| rs7996912 | 1.00[EUR][1000 genomes] |
| rs8001468 | 1.00[AMR][1000 genomes] |
| rs9516094 | 1.00[AMR][1000 genomes] |
| rs9523722 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9556194 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456070 | chr13:93208593-93298523 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv562730 | chr13:93208593-93298523 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1808762 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | esv1842146 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93237200-93277400 | Weak transcription | Right Atrium | heart |
