Variant report
| Variant | rs9561092 |
|---|---|
| Chromosome Location | chr13:93241022-93241023 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93239441..93241282-chr13:93243358..93246223,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs1011623 | 0.89[ASN][1000 genomes] |
| rs7987052 | 0.89[ASN][1000 genomes] |
| rs9516093 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9516102 | 1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes] |
| rs9523721 | 0.95[ASN][1000 genomes] |
| rs9561091 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9634628 | 0.84[ASN][1000 genomes] |
| rs9645880 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456070 | chr13:93208593-93298523 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv562730 | chr13:93208593-93298523 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1808762 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | esv1842146 | chr13:93232301-93241744 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv562731 | chr13:93240822-93245600 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv562732 | chr13:93240822-93245798 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9561092 | CSGALNACT2 | trans | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93237200-93277400 | Weak transcription | Right Atrium | heart |
