Variant report

Variant	rs12873919
Chromosome Location	chr13:98119524-98119525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1159277	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1159278	0.81[LWK][hapmap];0.88[YRI][hapmap]
rs11842356	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12865314	0.94[ASN][1000 genomes]
rs1304392	0.90[LWK][hapmap];1.00[YRI][hapmap]
rs2389908	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2389910	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs9554396	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98122200	Weak transcription	Gastric	stomach
2	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
3	chr13:98088600-98119600	Weak transcription	NH-A	brain
4	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
6	chr13:98091800-98123000	Weak transcription	HSMM	muscle
7	chr13:98101400-98123400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:98102200-98126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:98106000-98124200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:98108600-98134600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:98112000-98126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:98112200-98125000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:98112800-98119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr13:98113200-98120400	Weak transcription	Fetal Brain Male	brain
15	chr13:98113200-98120800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr13:98113200-98124200	Weak transcription	Spleen	Spleen
17	chr13:98113400-98127200	Weak transcription	Right Atrium	heart
18	chr13:98116800-98121400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr13:98116800-98124800	Weak transcription	Fetal Intestine Small	intestine
20	chr13:98116800-98126600	Weak transcription	Fetal Stomach	stomach
21	chr13:98116800-98127200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:98117000-98119600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr13:98117000-98119600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:98117000-98119800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:98117000-98120000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:98117000-98120600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr13:98117000-98120600	Weak transcription	NHEK	skin
28	chr13:98117000-98124200	Weak transcription	Lung	lung
29	chr13:98117000-98124400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr13:98117000-98126600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr13:98117000-98126600	Weak transcription	Aorta	Aorta
32	chr13:98117000-98130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr13:98117000-98130000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr13:98117200-98119600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr13:98117200-98120600	Weak transcription	Brain Anterior Caudate	brain
36	chr13:98117200-98123000	Weak transcription	Brain Germinal Matrix	brain
37	chr13:98117200-98126600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr13:98117400-98119800	Weak transcription	Brain Hippocampus Middle	brain
39	chr13:98117400-98120600	Weak transcription	Psoas Muscle	Psoas
40	chr13:98117400-98121200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr13:98117400-98122200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr13:98117400-98123200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr13:98117400-98126600	Weak transcription	NHDF-Ad	bronchial
44	chr13:98117400-98129600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr13:98117600-98119800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr13:98117600-98121600	Weak transcription	HUVEC	blood vessel
47	chr13:98117600-98124000	Weak transcription	Placenta	Placenta
48	chr13:98117600-98126400	Weak transcription	Fetal Kidney	kidney
49	chr13:98117600-98127000	Weak transcription	Adipose Nuclei	Adipose
50	chr13:98117800-98119600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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